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Table 6 Switch error percentage on simulated datasets of Chromosome 1

From: HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads

Avg.

HapCHAT

HapCol

WhatsHap

WhatsHap

HapCUT2

ReFHap

ProbHap

FastHare

Cov.

  

cov. 15x

cov. 20x

    

25

0.035

0.218

0.035

0.039

0.037

1.081

1.487

2.112

30

0.028

0.181

0.035

0.031

0.037

0.725

1.166

1.430

35

0.028

0.161

0.033

0.037

0.037

0.537

0.879

1.086

40

0.026

0.148

0.026

0.030

0.037

0.425

-

0.901

45

0.022

0.139

0.024

0.024

0.022

0.404

-

0.781

50

0.020

0.134

0.020

0.024

0.018

0.324

-

0.586

55

0.022

0.126

0.024

0.022

0.018

0.273

-

0.565

60

0.020

0.108

0.020

0.024

0.022

0.248

-

0.470

  1. For each dataset, its row identified by its average coverage (Avg. Cov.). We report the results obtained by running the tools with maximum coverage 30 × for HapCHAT, 25 × for HapCol, 15 × and 20 × for WhatsHap. No maximum coverage was set for HapCUT2, ReFHap, ProbHap, and FastHare. The best result (lowest value) for each dataset is boldfaced