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Table 7 Hamming Distance percentage on simulated datasets of Chromosome 1

From: HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads

Avg. HapCHAT HapCol WhatsHap WhatsHap HapCUT2 ReFHap ProbHap FastHare
Cov.    cov. 15x cov. 20x     
25 0.35 1.30 0.42 0.42 0.33 3.43 2.66 5.95
30 0.33 1.92 0.43 0.42 0.38 2.52 2.43 4.55
35 0.27 1.37 0.34 0.55 0.37 1.92 2.09 3.93
40 0.26 1.18 0.24 0.41 0.27 1.86 - 3.31
45 0.34 1.02 0.32 0.34 0.27 1.95 - 3.12
50 0.27 1.18 0.78 0.81 0.73 1.42 - 3.14
55 0.28 1.13 0.76 0.76 0.20 1.48 - 3.19
60 0.13 1.26 0.17 0.16 0.57 1.49 - 3.49
  1. For each dataset, its row identified by its average coverage (Avg. Cov.). We report the results obtained by running the tools with maximum coverage 30 × for HapCHAT, 25 × for HapCol, 15 × and 20 × for WhatsHap. No maximum coverage was set for HapCUT2, ReFHap, ProbHap, and FastHare. The best result (lowest value) for each dataset is boldfaced