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Table 8 QAN50 results of the tools on real simulated datasets of Chromosome 1

From: HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads

Avg.

HapCHAT

HapCol

WhatsHap

WhatsHap

HapCUT2

ReFHap

ProbHap

FastHare

Cov.

  

cov. 15x

cov. 20x

    

25

87890

85002

87581

87581

51183

50325

49121

45846

30

93454

87599

92831

92565

57323

56745

54412

52138

35

96311

92483

96167

95611

61204

60612

59047

56881

40

97810

95818

97810

97270

64979

64535

-

60748

45

100826

98674

100826

100826

68274

66973

-

64003

50

103348

100826

103348

103348

73159

73256

-

69457

55

105243

103348

106341

106341

74273

74402

-

71058

60

107121

105243

107569

107569

76497

76497

-

73256

  1. For each dataset, its row identified by its average coverage (Avg. Cov.). We report the results obtained by running the tools with maximum coverage 30 × for HapCHAT, 25 × for HapCol, 15 × and 20 × for WhatsHap. No maximum coverage was set for HapCUT2, ReFHap, ProbHap, and FastHare. The best result (highest value) for each dataset is boldfaced