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Table 9 Time in seconds of the tools on simulated datasets of Chromosome 1

From: HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads

Avg. HapCHAT HapCol WhatsHap WhatsHap HapCUT2 ReFHap ProbHap FastHare
Cov.    cov. 15x cov. 20x     
25 572 38863 1027 9686 205 44 33988 3
30 1317 47367 883 11095 238 91 56165 3
35 2167 18813 954 11650 286 167 80061 4
40 3052 20007 1048 12760 323 269 - 5
45 3754 56403 1161 12678 367 423 - 6
50 4399 57135 1170 12860 412 672 - 6
55 4882 56745 1287 13174 467 1019 - 7
60 5277 21070 1336 13407 496 1536 - 9
  1. For each dataset, its row identified by its average coverage (Avg. Cov.). We report the results obtained by running the tools with maximum coverage 30 × for HapCHAT, 25 × for HapCol, 15 × and 20 × for WhatsHap. No maximum coverage was set for HapCUT2, ReFHap, ProbHap, and FastHare