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Table 9 Time in seconds of the tools on simulated datasets of Chromosome 1

From: HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads

Avg.

HapCHAT

HapCol

WhatsHap

WhatsHap

HapCUT2

ReFHap

ProbHap

FastHare

Cov.

  

cov. 15x

cov. 20x

    

25

572

38863

1027

9686

205

44

33988

3

30

1317

47367

883

11095

238

91

56165

3

35

2167

18813

954

11650

286

167

80061

4

40

3052

20007

1048

12760

323

269

-

5

45

3754

56403

1161

12678

367

423

-

6

50

4399

57135

1170

12860

412

672

-

6

55

4882

56745

1287

13174

467

1019

-

7

60

5277

21070

1336

13407

496

1536

-

9

  1. For each dataset, its row identified by its average coverage (Avg. Cov.). We report the results obtained by running the tools with maximum coverage 30 × for HapCHAT, 25 × for HapCol, 15 × and 20 × for WhatsHap. No maximum coverage was set for HapCUT2, ReFHap, ProbHap, and FastHare
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BMC Bioinformatics

ISSN: 1471-2105

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