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Table 1 Novel oscillating protein candidates of C57BL/6 J [9] detected by MICOP

From: MICOP: Maximal information coefficient-based oscillation prediction to detect biological rhythms in proteomics data

Gene name Species Condition Tissue Reference
Acot8
Acox1 Homo sapiens LL blood [36]
  Mus musculus LD liver/SCN [37, 38]
Acsl5 Mus musculus DD/LD liver/SCN [39]
  Mus musculus LD SCN [37]
Akr1c14 Mus musculus LD liver [40]
  Mus musculus DD cartilage tissue [41]
Cbs Mus musculus DD/LD liver [42,43,44,45]
  Mus musculus LD SCN [37]
Homo sapiens LL blood [36]
Cct8 Mus musculus LD SCN [37]
Ces1b
Chid1 Mus musculus DD/LD liver/SCN [46]
Cxadr Mus musculus DD/LD liver/SCN [42]
Cyp4f14
Gns Homo sapiens LL blood [36]
  Mus musculus DD/LD liver [40]
Golgb1 Mus musculus DD/LD liver/SCN [37, 40, 47]
Gpx3
Hars Mus musculus LD liver [40]
Hrg
Mfap4
Mug1 Mus musculus DD liver [42]
Pdcd6 Mus musculus LD liver/SCN [37, 40, 47],
Ptms Mus musculus LD SCN [37]
Safb
Serpina6 Mus musculus DD/LD liver [44]
Sf3b2 Mus musculus LD telogen epidermis [46]
Slc9a3r1 Mus musculus DD/LD liver [46]
Snrpd3 Mus musculus LD liver [47]
Stk38 Mus musculus DD liver [46]
  Mus musculus LD SCN [37]
Tpr Mus musculus DD/LD liver [40, 46]
Txndc15 Mus musculus DD/LD liver [46, 47]
  Mus musculus LD SCN [37]
Ubl4a Mus musculus LD SCN [37]
  Mus musculus DD liver [46]
Uox Mus musculus DD/LD liver [39, 40, 42, 47]
Ythdf2 Mus musculus LD liver [47]
  1. Novel oscillating protein candidates identified by MICOP from time-series proteomics data of C57BL/6 J [9] and a list of previous papers that have experimentally demonstrated that gene expression oscillates in transcriptome analysis. LD stands for the daily 24-h light-dark (LD) cycle and DD stands for constant darkness conditions. Hyphens indicate that we could not find previous consistent works which prove the mRNA oscillation
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