MICOP: Maximal information coefficient-based oscillation prediction to detect biological rhythms in proteomics data

Table 2 Novel oscillating protein candidates of C57BL/6 [8] detected by MICOP

Gene name	Species	Condition	Tissue	Reference
Anp32e	Mus musculus	DD/LD	liver	[39, 40]
Anpep	–	–	–	–
Cgn	Mus musculus	LD	liver	[47]
Csde1	Mus musculus	DD	liver	[39]
	Mus musculus	LD	SCN	[37]
Enpp4	Mus musculus	LD	liver/anagen epidermis	[40, 46, 47]
Gnl2	Mus musculus	DD	hippocampus/liver	[39, 48]
	Mus musculus	LD	SCN	[37]
Ldhb	Homo sapiens	LL	blood	[36]
	Mus musculus	LD	anagen epidermis, SCN	[37, 46]
Numa1	Mus musculus	LD	liver	[40]
	Mus musculus	DD	cartilage tissue	[41]
Prdx2	Mus musculus	LD	SCN	[37]
Rnf114	–	–	–	–
Slc4a1	–	–	–	–
Slco1b2	Mus musculus	DD/LD	liver	[39, 40, 42]
Tomm70a	–	–	–	–
Vps26a	–	–	–	–

Novel oscillating protein candidates identified by MICOP from time-series proteomics data of C57BL/6 [8] and a list of previous papers which experimentally demonstrated that gene expression oscillates in transcriptome analysis. LD stands for the daily 24-h light-dark (LD) cycle and DD stands for constant darkness conditions. Hyphens indicate that we could not find previous consistent works which prove the mRNA oscillation

ISSN: 1471-2105