Table 1 Number of Reads Aligned to Different Genomic Regions
From: trumpet: transcriptome-guided quality assessment of m6A-seq data
Sample ID | GEO | Total | Exon | Intron | Non-genic | 5’UTR | CDS | 3’UTR |
|---|---|---|---|---|---|---|---|---|
IP1 | GSM1147020 | 28.9 M | 14.1 M (48.78%) | 1.5 M (5.18%) | 13.31 M (46.04%) | 1.1 M (7.72%) | 7.92 M (55.35%) | 5.28 M (36.93%) |
IP2 | GSM1147022 | 11.6 M | 5.71 M (49.18%) | 0.6 M (5.17%) | 5.3 M (45.65%) | 0.52 M (9.68%) | 3.3 M (61.42%) | 1.56 M (29.0%) |
IP3 | GSM1147024 | 36.86 M | 17.85 M (48.42%) | 1.92 M (5.2%) | 17.1 M (46.38%) | 1.19 M (6.82%) | 10.17 M (58.21%) | 6.11 M (34.97%) |
Input1 | GSM1147021 | 14.82 M | 6.52 M (43.99%) | 0.47 M (3.17%) | 7.83 M (52.84%) | 0.31 M (7.43%) | 2.3 M (55.16%) | 1.56 M (37.41%) |
Input2 | GSM1147023 | 17.15 M | 6.9 M (40.26%) | 0.42 M (2.45%) | 9.82 M (57.29%) | 0.17 M (8.81%) | 1.06 M (54.92%) | 0.7 M (36.27%) |
Input3 | GSM1147025 | 18.15 M | 7.63 M (42.06%) | 0.46 M (2.54%) | 10.05 M (55.4%) | 0.28 M (7.37%) | 2.09 M (55%) | 1.43 M (37.63%) |