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Table 1 Number of Reads Aligned to Different Genomic Regions

From: trumpet: transcriptome-guided quality assessment of m6A-seq data

Sample ID GEO Total Exon Intron Non-genic 5’UTR CDS 3’UTR
IP1 GSM1147020 28.9 M 14.1 M (48.78%) 1.5 M (5.18%) 13.31 M (46.04%) 1.1 M (7.72%) 7.92 M (55.35%) 5.28 M (36.93%)
IP2 GSM1147022 11.6 M 5.71 M (49.18%) 0.6 M (5.17%) 5.3 M (45.65%) 0.52 M (9.68%) 3.3 M (61.42%) 1.56 M (29.0%)
IP3 GSM1147024 36.86 M 17.85 M (48.42%) 1.92 M (5.2%) 17.1 M (46.38%) 1.19 M (6.82%) 10.17 M (58.21%) 6.11 M (34.97%)
Input1 GSM1147021 14.82 M 6.52 M (43.99%) 0.47 M (3.17%) 7.83 M (52.84%) 0.31 M (7.43%) 2.3 M (55.16%) 1.56 M (37.41%)
Input2 GSM1147023 17.15 M 6.9 M (40.26%) 0.42 M (2.45%) 9.82 M (57.29%) 0.17 M (8.81%) 1.06 M (54.92%) 0.7 M (36.27%)
Input3 GSM1147025 18.15 M 7.63 M (42.06%) 0.46 M (2.54%) 10.05 M (55.4%) 0.28 M (7.37%) 2.09 M (55%) 1.43 M (37.63%)
  1. The number of reads mapped to different regions is summarized as following. A summary table matching the sample ID with the input BAM files is also provided in the full report. Issues may be identified if a metrics is significantly different from other samples. E.g., the total number of reads and the reads mapped to 3’UTR of IP2 sample are both significantly different than all other IP samples