TY - CHAP AU - Hannenhalli, S. AU - Pevzner, P. A. PY - 1995 DA - 1995// TI - Transforming men into mice (polynomial algorithm for genomic distance problem) BT - Foundations of Computer Science, 1995. Proceedings., 36th Annual Symposium On PB - IEEE CY - USA ID - Hannenhalli1995 ER - TY - CHAP AU - Bafna, V. AU - Pevzner, P. PY - 1995 DA - 1995// TI - Sorting permutations by tanspositions BT - Proceedings of the Sixth Annual ACM-SIAM Symposium on Discrete Algorithms PB - Society for Industrial and Applied Mathematics CY - USA ID - Bafna1995 ER - TY - JOUR AU - Tesler, G. PY - 2002 DA - 2002// TI - Efficient algorithms for multichromosomal genome rearrangements JO - J Comput Syst Sci VL - 65 UR - https://doi.org/10.1016/S0022-0000(02)00011-9 DO - 10.1016/S0022-0000(02)00011-9 ID - Tesler2002 ER - TY - JOUR AU - Tesler, G. PY - 2002 DA - 2002// TI - Grimm: genome rearrangements web server JO - Bioinformatics VL - 18 UR - https://doi.org/10.1093/bioinformatics/18.3.492 DO - 10.1093/bioinformatics/18.3.492 ID - Tesler2002 ER - TY - JOUR AU - Lin, Y. C. AU - Lu, C. L. AU - Liu, Y. -. C. AU - Tang, C. Y. PY - 2006 DA - 2006// TI - Spring: a tool for the analysis of genome rearrangement using reversals and block-interchanges JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkl169 DO - 10.1093/nar/gkl169 ID - Lin2006 ER - TY - JOUR AU - Darmon, E. AU - Leach, D. R. PY - 2014 DA - 2014// TI - Bacterial genome instability JO - Microbiol Mol Biol Rev VL - 78 UR - https://doi.org/10.1128/MMBR.00035-13 DO - 10.1128/MMBR.00035-13 ID - Darmon2014 ER - TY - JOUR AU - Gray, Y. H. PY - 2000 DA - 2000// TI - It takes two transposons to tango: transposable-element-mediated chromosomal rearrangements JO - Trends Genet VL - 16 UR - https://doi.org/10.1016/S0168-9525(00)02104-1 DO - 10.1016/S0168-9525(00)02104-1 ID - Gray2000 ER - TY - JOUR AU - Longo, M. S. AU - Carone, D. M. AU - Green, E. D. AU - O’Neill, M. J. AU - O’Neill, R. J. PY - 2009 DA - 2009// TI - Distinct retroelement classes define evolutionary breakpoints demarcating sites of evolutionary novelty JO - BMC Genomics VL - 10 UR - https://doi.org/10.1186/1471-2164-10-334 DO - 10.1186/1471-2164-10-334 ID - Longo2009 ER - TY - JOUR AU - Sankoff, D. PY - 2009 DA - 2009// TI - The where and wherefore of evolutionary breakpoints JO - J Biol VL - 8 UR - https://doi.org/10.1186/jbiol162 DO - 10.1186/jbiol162 ID - Sankoff2009 ER - TY - JOUR AU - Small, K. AU - Iber, J. AU - Warren, S. T. PY - 1997 DA - 1997// TI - Emerin deletion reveals a common X-chromosome inversion mediated by inverted repeats JO - Nat Genet VL - 16 UR - https://doi.org/10.1038/ng0597-96 DO - 10.1038/ng0597-96 ID - Small1997 ER - TY - JOUR AU - Rajaraman, A. AU - Tannier, E. AU - Chauve, C. PY - 2013 DA - 2013// TI - Fpsac: fast phylogenetic scaffolding of ancient contigs JO - Bioinformatics VL - 29 UR - https://doi.org/10.1093/bioinformatics/btt527 DO - 10.1093/bioinformatics/btt527 ID - Rajaraman2013 ER - TY - JOUR AU - Thomas, A. AU - Varré, J. -. S. AU - Ouangraoua, A. PY - 2011 DA - 2011// TI - Genome dedoubling by dcj and reversal JO - BMC Bioinformatics VL - 12 ID - Thomas2011 ER - TY - JOUR AU - Bailey, J. A. AU - Baertsch, R. AU - Kent, W. J. AU - Haussler, D. AU - Eichler, E. E. PY - 2004 DA - 2004// TI - Hotspots of mammalian chromosomal evolution JO - Genome Biol VL - 5 UR - https://doi.org/10.1186/gb-2004-5-4-r23 DO - 10.1186/gb-2004-5-4-r23 ID - Bailey2004 ER - TY - JOUR AU - Armengol, L. AU - Pujana, M. A. AU - Cheung, J. AU - Scherer, S. W. AU - Estivill, X. PY - 2003 DA - 2003// TI - Enrichment of segmental duplications in regions of breaks of synteny between the human and mouse genomes suggest their involvement in evolutionary rearrangements JO - Hum Mol Genet VL - 12 UR - https://doi.org/10.1093/hmg/ddg223 DO - 10.1093/hmg/ddg223 ID - Armengol2003 ER - TY - JOUR AU - Angiuoli, S. V. AU - Salzberg, S. L. PY - 2011 DA - 2011// TI - Mugsy: fast multiple alignment of closely related whole genomes JO - Bioinformatics VL - 27 UR - https://doi.org/10.1093/bioinformatics/btq665 DO - 10.1093/bioinformatics/btq665 ID - Angiuoli2011 ER - TY - JOUR AU - Altschul, S. F. AU - Gish, W. AU - Miller, W. AU - Myers, E. W. AU - Lipman, D. J. PY - 1990 DA - 1990// TI - Basic local alignment search tool JO - J Mol Biol VL - 215 UR - https://doi.org/10.1016/S0022-2836(05)80360-2 DO - 10.1016/S0022-2836(05)80360-2 ID - Altschul1990 ER - TY - BOOK AU - Cai, Z. AU - Daescu, O. AU - Li, M. PY - 2017 DA - 2017// TI - Bioinformatics Research and Applications: 13th International Symposium, ISBRA 2017, Honolulu, HI, USA, May 29–June 2, 2017, Proceedings. vol. 10330 PB - Springer CY - Berlin, Heidelberg UR - https://doi.org/10.1007/978-3-319-59575-7 DO - 10.1007/978-3-319-59575-7 ID - Cai2017 ER -