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Table 1 Selected reference model species using taxonomy-based and UCO approaches for Corbicula fluminea, Chanos chanos, Acanthopagrus schlegelii, and Chlorella Sp

From: Multiple model species selection for transcriptomics analysis of non-model organisms

Tax ID Scientific name Taxonomy UCO
45,949 Corbicula fluminea Crassostrea gigas 9 Crassostrea gigas 231
Lottia gigantea 8 Lottia gigantea 85
Helobdella robusta 7 Branchiostoma floridae 10
29,144 Chanos chanos Danio rerio 21 Danio rerio 227
Oryzias latipes 18 Oryzias latipes 74
Xiphophorus maculatus 18 Xiphophorus maculatus 25
Maylandia zebra 18   
Takifugu rubripes 18   
72,011 Acanthopagrus schlegelii Takifugu rubripes 27 Maylandia zebra 234
Maylandia zebra 26 Takifugu rubripes 62
Xiphophorus maculatus 26 Xiphophorus maculatus 32
Oryzias latipes 26   
Danio rerio 19   
3,071 Chlorella sp. Chlorella variabilis 9 Chlorella variabilis 270
Coccomyxa subellipsoidea 5 Volvox carteri f. nagariensis 30
Volvox carteri f. nagariensis 4 Chlamydomonas reinhardtii 8
Chlamydomonas reinhardtii 4 Ostreococcus tauri 8
Ostreococcus tauri 4   
Micromonas sp. RCC299 4   
Micromonas pusilla 4   
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