Skip to main content

Table 1 Sets of benchmark data

From: De novo assembly of bacterial genomes with repetitive DNA regions by dnaasm application

Sample

Coverage

Read length

Insert size mean

Insert size std dev

ERR351243

200x

100 bp

250 bp

63 bp

SRR1981622

200x

100 bp

226 bp

84 bp

SRR1981619

200x

100 bp

211 bp

78 bp

SRR5431732

150x

75 bp

268 bp

101 bp

  1. To compare the performance of our approach and another de novo DNA assemblers we used four bacterial datasets - ERR351243, SRR1981622, SRR1981619 and SRR5431732. To speed up calculations, we decreased the value of genome coverage in ERR351243, SRR1981622 and SRR1981619 datasets to 200x