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Table 3 Evaluation of tandem repeats reconstruction algorithm in dnaasm

From: De novo assembly of bacterial genomes with repetitive DNA regions by dnaasm application

Sample Type of output With tandem repeats reconstruction Without tandem repeats reconstruction
   No. of contigs N50 [bp] Max [bp] No. of contigs N50 [bp] Max [bp]
ERR351243 unitigs 84 30628 191880 93 27268 176501
  scaffolds 34 61265 333846 34 61265 333846
SRR1981622 unitigs 73 45793 134195 82 33787 110992
  scaffolds 39 91627 228504 43 80288 206366
SRR1981619 unitigs 77 43959 134261 81 36452 110995
  scaffolds 38 93136 256270 42 84434 205320
SRR5431732 unitigs 416 16178 59383 450 14774 47710
  scaffolds 354 19644 120052 388 17344 120052
  1. Unitigs output depicts assembling mode without using paired-end tags, scaffolds - with paired reads. The table shows that tandem repeats reconstructuion process could significantly improve the results in terms of the number of contigs, N50 statistic and the largest contig length