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Table 1 Comparison of profile generation times

From: De novo profile generation based on sequence context specificity with the long short-term memory network

 

Mean

SD

SPBuild

5.99

3.83

CSBuild

0.390

0.161

RPS-BLAST

0.208

0.102

HHBlits

120

105

  1. Means and standard deviations (SDs) of profile generation times (s) against 5819 sequences in the SCOP20 test dataset
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BMC Bioinformatics

ISSN: 1471-2105

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