miRge 2.0 for comprehensive analysis of microRNA sequencing data

Lu, Yin; Baras, Alexander S.; Halushka, Marc K.

doi:10.1186/s12859-018-2287-y

BMC Bioinformatics

Table 4 Predictive results of 32 human cell data in a test set by the human model

From: miRge 2.0 for comprehensive analysis of microRNA sequencing data

Cell Type	SRA References	AUC	Precision	Recall	MCC
Fibroblast Aorta Adventitia	SRR5127206	0.995	0.983	0.963	0.945
Smooth Muscle Cell Aorta	SRR5127217	0.994	0.981	0.961	0.938
Astrocyte	SRR5127214	0.994	0.98	0.968	0.949
Smooth Muscle Cell Bladder	SRR5127215	0.992	0.971	0.963	0.936
Fibroblast Dermal (Adult)	SRR5127205	0.995	0.983	0.974	0.95
Fibroblast Dermal (Neonatal)	SRR5127225	0.995	0.989	0.96	0.942
Epithelium Keratinocyte (Adult)	SRR5127203	0.994	0.977	0.962	0.934
Epithelium Keratinocyte (Neonatal)	SRR5127208	0.993	0.975	0.942	0.923
Endothelial Aortic	SRR5139121	0.988	0.975	0.932	0.915
Endothelial Umbilical vein	SRR5127213	0.993	0.981	0.954	0.926
Epithelium Bronchial	SRR5127216	0.988	0.974	0.951	0.935
Chondrocyte	SRR5127229	0.995	0.985	0.959	0.944
Endothelial Microvascular	SRR5127201	0.991	0.973	0.957	0.945
Fibroblast Cardiac	SRR5127236	0.992	0.983	0.945	0.94
Melanocyte	SRR5127207	0.995	0.99	0.981	0.954
Epithelium Mammary	SRR5127224	0.99	0.976	0.941	0.927
Epithelium Prostate	SRR5127212	0.992	0.975	0.961	0.948
Epithelium Renal Cortex	SRR5127204	0.988	0.966	0.948	0.927
Epithelium Renal Proximal	SRR5127230	0.992	0.978	0.949	0.936
Stromal cell Prostate	SRR5127226	0.991	0.976	0.963	0.94
Myoblast Skeletal Muscle	SRR5127218	0.99	0.974	0.956	0.932
Epithelium Intestinal	SRR5127223	0.994	0.985	0.973	0.957
Myofibroblast	SRR5127220	0.991	0.987	0.965	0.95
Smooth Muscle Cell Prostate	SRR5127222	0.991	0.978	0.961	0.943
Neuron Dopaminergic	SRR5127234	0.982	0.963	0.922	0.916
Neuron Cortical	SRR5127209	0.986	0.968	0.917	0.917
Mesangial	SRR5127221	0.996	0.986	0.971	0.948
Osteoblast	SRR5127233	0.997	0.986	0.955	0.946
Fibroblast Periodontal ligament	SRR5127227	0.994	0.986	0.962	0.946
Epithelium Renal	SRR5127235	0.992	0.989	0.954	0.936
Epithelium Retinal Pigment	SRR5127210	0.994	0.988	0.974	0.959
Skeletal Muscle Cell	SRR5127202	0.995	0.984	0.96	0.936
Mean		0.992	0.98	0.956	0.939
Std dev		0.003	0.007	0.014	0.012

Back to article page

ISSN: 1471-2105

Contact us

General enquiries: journalsubmissions@springernature.com