From: miREM: an expectation-maximization approach for prioritizing miRNAs associated with gene-set
Input data | Predictions | ||||||
---|---|---|---|---|---|---|---|
Datasets | miRNA | DEG | miREM (based | ChemiRsc | GeneSet2MiRNAc | CORNAc | Sylamerd |
involved | a | on EM)b | |||||
Cytoplasmic | hsa-miR-155 | 647 | hsa-miR-155-5p | hsa-miR- | HSA-MIR-155 | hsa-mir-155 | has-miR-155 |
RNA-seq in | knock in | (1/160) | 155-5p | (1/23) | (1/2) | ||
U2OS cells | (1/118) | ||||||
Cytoplasmic | hsa-miR-1 | 743 | hsa-miR-1-3p | hsa-miR-1- | HSA-MIR-1 (1/6) | hsa-mir-1 | has-miR-1 |
RNA-seq in | knock in | (3/9) | 3p (1/65) | (2/4) | |||
U2OS cells | |||||||
Microarray in | miR-144/451 | 396 | mmu-miR-144- | Not | mmu-mir-144 | mmu-mir-144 | mmu-miR- |
mice | knock out | 3p (1/2) | Applicablee | (3/3) * | (2/4) * | 144 | |
mmu-miR-451a | |||||||
(2/2) |