Multi-class segmentation of neuronal structures in electron microscopy images

BMC Bioinformatics

Table 2 Data sets used in the experiments

Dataset	Labels	Voxel size (nm)	Train (voxels)	Test (voxels)
Hippocampus	Mit & Syn	5×5×5	1024×653×165	1024×653×165
Somatosensory cortex	Mit & Syn	14.7×14.7×20	366×494×100	366×494×113
Cerebellum	Mit & Mem	10×10×50	700×700×20	700×700×26

We denote the annotated labels in each data set as synapses (Syn), mitochondria (Mit) and membranes (Mem). We select train and test sets from consecutive slices in the stack. We use approximately half of each stack for training and the rest for testing

ISSN: 1471-2105