Table 2 Number of unique terms enriched in clusterings for different disease maps and ontologies (DO: Disease Ontology, GO: Gene Ontology)
From: Clustering approaches for visual knowledge exploration in molecular interaction networks
| Â | PD map | AlzPathway | AlzPathway Reorg | |||
|---|---|---|---|---|---|---|
Distance | DO | GO | DO | GO | DO | GO |
Expert-based | 36 / 275 | 36 / 1449 | 20 / 1 | 20 / 43 | 20 / 1 | 20 / 70 |
GO BP >Eu | 61 / 353 | 61 / 2203 | 51 / 76 | 51 / 196 | 32 / 76 | 32 / 720 |
GO BP >Net | 59 / 368 | 59 / 2211 | 48 / 72 | 48 / 196 | 35 / 13 | 35 / 409 |
Eu >GO BP | 52 / 363 | 52 / 1860 | 3 / 5 | 3 / 19 | 3 / 1 | 3/1 |
Eu >Net | 88 / 372 | 88 / 1929 | 68 / 101 | 68 / 238 | 98 / 17 | 98 / 18 |
Net >Eu | 67 / 158 | 67 / 1463 | 71 / 85 | 71 / 343 | 65 / 1 | 65 / 23 |
Eu+Net | 93 / 339 | 98 / 1641 | 58 / 75 | 90 / 201 | 41 / 8 | 2 / 1 |
Eu+GO BP | 89 / 334 | 97 / 1669 | 61 / 86 | 97 / 179 | 13 / 6 | 90 / 14 |
Net+GO BP | 81 / 289 | 86 / 1563 | 49 / 47 | 55 / 182 | 2 / 1 | 97 / 136 |