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Table 1 The results of RNAfitme using NG-E-HR library to process RNA 3D structures from S19 dataset

From: RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures

PDB ID: Chain

Chain length

Base pairs

Clash score

Nucleobase remodeling mode

Nucleoside residue remodeling mode

RMSD [Ã…]

INF

Clash score

RMSD [Ã…]

INF

Clash score

1CX0: B

72

22

15.12

0.468

1.000

9.50

1.019

1.000

8.65

1EXD: B

73

19

38.35

0.784

0.975

11.50

1.151

0.919

5.11

1FFY: T

75

22

19.77

0.813

1.000

15.31

0.761

1.000

6.21

1GID: A

158

48

41.62

0.636

1.000

14.55

1.035

0.936

7.28

1I6U: C

37

15

6.72

0.779

1.000

3.36

0.915

0.931

0.84

1MMS: C

58

14

8.05

0.897

0.966

5.89

0.804

0.966

3.22

1U0B: A

74

20

13.89

0.387

0.976

9.70

0.626

0.976

2.53

1UN6: E

61

17

16.26

0.917

0.946

8.12

0.979

0.915

3.55

1WZ2: C

88

24

23.98

0.622

0.958

13.40

1.085

0.914

8.82

1Y0Q: A

229

68

53.95

0.753

0.963

24.71

0.836

0.955

9.78

2J00: W

76

18

31.91

1.048

0.949

16.78

1.598

0.919

6.14

2PXL: B

47

14

7.24

0.462

1.000

3.29

0.743

0.964

1.31

3ADB: C

92

33

11.78

0.541

1.000

5.39

0.676

0.969

2.36

3AM1: B

81

30

33.28

0.529

1.000

15.30

0.835

0.966

8.80

3CUL: C

92

26

13.88

0.548

0.964

4.73

0.787

0.944

0.68

3IAB: R

46

12

8.78

1.237

1.000

5.40

1.410

1.000

2.03

3IQP: A

94

31

24.91

0.856

0.984

16.07

0.771

0.967

6.89

3IWN: A

93

28

24.97

0.800

0.982

16.63

1.174

0.906

11.64

3OFQ: B

117

34

51.89

0.920

0.985

21.46

1.083

0.955

8.74

Average value:

23.49

0.737

0.981

11.64

0.963

0.953

5.50