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Table 1 Artificial datasets used for the evaluation of graph aligner tools

From: BrownieAligner: accurate alignment of Illumina sequencing data to de Bruijn graphs

Abbr.

Organism

Reference ID

Genome

Repeated

Sequencing

Cov.

Read

   

size

31-mers (%)

platform

 

length

S1

Escherichia coli K-12 DH10B

NC010473

4.5 Mbp

3.2

Illumina HiSeq 2500

25

150 bp

S2

Escherichia coli K-12 DH10B

NC010473

4.5 Mbp

3.2

Illumina HiSeq 2000

50

100 bp

S3

Homo sapiens Chr. 21

HG19

45.2 Mbp

4.3

Illumina HiSeq 2500

25

150 bp

S4

Homo sapiens Chr. 21

HG19

45.2 Mbp

4.3

Illumina HiSeq 2000

50

100 bp

S5

Drosophila melanogaster

Release 5

116.4 Mbp

1.1

Illumina HiSeq 2500

25

150 bp

S6

Drosophila melanogaster

Release 5

116.4 Mbp

1.1

Illumina HiSeq 2000

50

100 bp