BrownieAligner: accurate alignment of Illumina sequencing data to de Bruijn graphs

BMC Bioinformatics

Table 5 Accuracy comparison of graph aligner tools in terms of correct alignment of reads to the graph on real data

	R1	R2	R3	R4	R5	R6	R7	R8
	Percentage of correctly aligned reads. (%)
BGREAT	94.55	94.28	91.28	84.97	96.09	92.01	94.57	80.37
BrownieAligner	99.81	99.81	99.55	99.02	99.78	96.98	96.53	89.59
BrownieAlignerNoMM	99.81	99.80	99.52	98.99	99.78	96.67	96.47	89.55
deBGA	99.67	99.30	92.36	97.31	93.63	98.42	74.72	85.42

ISSN: 1471-2105