Table 2 Three types of physicochemical properties of dinucleotides in RNA
From: PseUI: Pseudouridine sites identification based on RNA sequence information
Dinucleotide | Free energy | Hydrophilicity | Stacking energy |
|---|---|---|---|
GG | −3.260 | 0.170 | −11.100 |
GA | − 2.350 | 0.100 | − 14.200 |
GC | −3.420 | 0.260 | −16.900 |
GU | −2.240 | 0.270 | −13.800 |
AG | −2.080 | 0.080 | −14.000 |
AA | −0.930 | 0.040 | −13.700 |
AC | −2.240 | 0.140 | −13.800 |
AU | −1.100 | 0.140 | −15.400 |
CG | −2.360 | 0.350 | −15.600 |
CA | −2.110 | 0.210 | −14.400 |
CC | −3.260 | 0.490 | −11.100 |
CU | −2.080 | 0.520 | −14.000 |
UG | −2.110 | 0.340 | −14.400 |
UA | −1.330 | 0.210 | −16.000 |
UC | −2.350 | 0.480 | −14.200 |
UU | −0.930 | 0.440 | −13.700 |