Table 4 Filtering quality (unaligned sequences)
Test | Pairs in output | Pairs that passed filtering | Filtering PPV | # of led(S,Q) calculations | led(S,Q)/allpairs |
|---|---|---|---|---|---|
d1 | 60 421 | 65 937 | 0.9163 | 5 517 | 1.1% |
d2 | 370 262 | 397 987 | 0.9303 | 18 754 | 0.93% |
d3 | 1 800 945 | 1 873 268 | 0.9614 | 72 820 | 0.91% |
d4 | 5 848 556 | 6 256 934 | 0.9347 | 411 660 | 1.28% |
d5 | 18 570 536 | 21 028 890 | 0.8831 | 2 477 531 | 1.94% |
d6 | 38 835 302 | 46 744 915 | 0.8308 | 7 952 495 | 1.55% |
d7 | 155 373 208 | 187 011 650 | 0.8308 | 31 809 970 | 1.55% |
d8 | 621 556 832 | 748 119 580 | 0.8308 | 127 239 860 | 1.55% |
m1 | 51 453 578 | 54 640 978 | 0.9417 | 7 303 118 | 14.2% |