TY - BOOK AU - Lehmann, J. AU - Voelker, J. PY - 2014 DA - 2014// TI - An introduction to ontology learning. Perspectives on Ontology Learning PB - IOS Press CY - Amsterdam ID - Lehmann2014 ER - TY - BOOK AU - Brickley, D. AU - Guha, R. V. PY - 2000 DA - 2000// TI - Resource description framework (RDF) Schema specification 1.0: W3C candidate recommendation 27 March 2000 ID - Brickley2000 ER - TY - CHAP AU - McBride, B. PY - 2004 DA - 2004// TI - The resource description framework (RDF) and its vocabulary description language RDFS BT - Handbook on ontologies PB - Springer CY - Berlin Heidelberg UR - https://doi.org/10.1007/978-3-540-24750-0_3 DO - 10.1007/978-3-540-24750-0_3 ID - McBride2004 ER - TY - STD TI - Bechhofer S. OWL: Web ontology language. In: Encyclopedia of Database Systems. US: Springer; 2009. p. 2008–9. ID - ref4 ER - TY - BOOK AU - Miles, A. AU - Bechhofer, S. PY - 2009 DA - 2009// TI - SKOS simple knowledge organization system reference ID - Miles2009 ER - TY - JOUR AU - Xue, X. AU - Wang, Y. PY - 2016 DA - 2016// TI - Using memetic algorithm for instance coreference resolution JO - IEEE Trans Knowl Data Eng VL - 28 UR - https://doi.org/10.1109/TKDE.2015.2475755 DO - 10.1109/TKDE.2015.2475755 ID - Xue2016 ER - TY - BOOK AU - Bizer, C. AU - Heath, T. AU - Berners-Lee, T. PY - 2009 DA - 2009// TI - Linked data-the story so far. Semantic services, interoperability and web applications: emerging concepts ID - Bizer2009 ER - TY - JOUR AU - Abacha, A. B. AU - Zweigenbaum, P. PY - 2011 DA - 2011// TI - Automatic extraction of semantic relations between medical entities: a rule based approach JO - J Biomed Semant VL - 2 UR - https://doi.org/10.1186/2041-1480-2-S5-S4 DO - 10.1186/2041-1480-2-S5-S4 ID - Abacha2011 ER - TY - JOUR AU - Ono, T. AU - Hishigaki, H. AU - Tanigami, A. AU - Takagi, T. PY - 2001 DA - 2001// TI - Automated extraction of information on protein–protein interactions from the biological literature JO - Bioinformatics VL - 17 UR - https://doi.org/10.1093/bioinformatics/17.2.155 DO - 10.1093/bioinformatics/17.2.155 ID - Ono2001 ER - TY - CHAP AU - Ding, J. AU - Berleant, D. AU - Nettleton, D. AU - Wurtele, E. PY - 2002 DA - 2002// TI - Mining MEDLINE: abstracts, sentences, or phrases BT - Proceedings of the pacific symposium on biocomputing ID - Ding2002 ER - TY - BOOK AU - Siniakov, P. PY - 2008 DA - 2008// TI - GROPUS an adaptive rule-based algorithm for information extraction PB - Doctoral dissertation CY - Freie Universität Berlin ID - Siniakov2008 ER - TY - CHAP AU - Maynard, D. AU - Funk, A. AU - Peters, W. PY - 2009 DA - 2009// TI - Using lexico-syntactic ontology design patterns for ontology creation and population BT - Proceedings of the 2009 International Conference on Ontology Patterns-Volume 516 ID - Maynard2009 ER - TY - CHAP AU - Reiss, F. AU - Raghavan, S. AU - Krishnamurthy, R. AU - Zhu, H. AU - Vaithyanathan, S. PY - 2008 DA - 2008// TI - An algebraic approach to rule-based information extraction BT - Data Engineering, 2008. ICDE 2008. IEEE 24th International Conference on ID - Reiss2008 ER - TY - STD TI - Hearst MA. Automatic acquisition of hyponyms from large text corpora. In: Proceedings of the 14th conference on Computational linguistics. Association for Computational Linguistics. 1992;2:539–45. ID - ref14 ER - TY - CHAP AU - Snow, R. AU - Jurafsky, D. AU - Ng, A. Y. PY - 2004 DA - 2004// TI - Learning syntactic patterns for automatic hypernym discovery BT - NIPS ID - Snow2004 ER - TY - BOOK AU - Voutilainen, A. PY - 2003 DA - 2003// TI - Part-of-speech tagging. The Oxford handbook of computational linguistics ID - Voutilainen2003 ER - TY - JOUR AU - Kumar, N. AU - Kumar, M. AU - Singh, M. PY - 2016 DA - 2016// TI - Automated ontology generation from a plain text using statistical and NLP techniques JO - Int J Syst Assur Eng Manag VL - 7 UR - https://doi.org/10.1007/s13198-015-0403-1 DO - 10.1007/s13198-015-0403-1 ID - Kumar2016 ER - TY - JOUR AU - Bundschus, M. AU - Dejori, M. AU - Stetter, M. AU - Tresp, V. AU - Kriegel, H. P. PY - 2008 DA - 2008// TI - Extraction of semantic biomedical relations from text using conditional random fields JO - BMC Bioinf VL - 9 UR - https://doi.org/10.1186/1471-2105-9-207 DO - 10.1186/1471-2105-9-207 ID - Bundschus2008 ER - TY - STD TI - Coden AR, Savova GK, Buntrock JD, Sominsky IL, Ogren PV, Chute CG, de Groen PC. Text analysis integration into a medical information retrieval system: challenges related to word sense disambiguation. In Medinfo 2007: Proceedings of the 12th World Congress on Health (Medical) Informatics; Building Sustainable Health Systems. 2007. p. 2218. IOS Press. ID - ref19 ER - TY - CHAP AU - Cimiano, P. PY - 2005 DA - 2005// TI - Ontology learning and population BT - Proceedings Dagstuhl Seminar Machine Learning for the Semantic Web ID - Cimiano2005 ER - TY - CHAP AU - Poesio, M. AU - Barbu, E. AU - Giuliano, C. AU - Romano, L. AU - Kessler, F. B. PY - 2008 DA - 2008// TI - Supervised relation extraction for ontology learning from text based on a cognitively plausible model of relations BT - ECAI 2008 3rd Workshop on Ontology Learning and Population ID - Poesio2008 ER - TY - JOUR AU - Huang, J. -. X. AU - Lee, K. S. AU - Choi, K. -. S. AU - Kim, Y. -. K. PY - 2016 DA - 2016// TI - Extract reliable relations from Wikipedia texts for practical ontology construction JO - Computación y Sistemas VL - 20 UR - https://doi.org/10.13053/cys-20-3-2454 DO - 10.13053/cys-20-3-2454 ID - Huang2016 ER - TY - JOUR AU - del Carmen Legaz-García, M. AU - Miñarro-Giménez, J. A. AU - Menárguez-Tortosa, M. AU - Fernández-Breis, J. T. PY - 2016 DA - 2016// TI - Generation of open biomedical datasets through ontology-driven transformation and integration processes JO - J Biomed Semant VL - 7 UR - https://doi.org/10.1186/s13326-016-0075-z DO - 10.1186/s13326-016-0075-z ID - del Carmen Legaz-García2016 ER - TY - JOUR AU - Missikoff, M. AU - Navigli, R. AU - Velardi, P. PY - 2002 DA - 2002// TI - Integrated approach to web ontology learning and engineering JO - Computer VL - 35 UR - https://doi.org/10.1109/MC.2002.1046976 DO - 10.1109/MC.2002.1046976 ID - Missikoff2002 ER - TY - JOUR AU - Doing-Harris, K. AU - Livnat, Y. AU - Meystre, S. PY - 2015 DA - 2015// TI - Automated concept and relationship extraction for the semi-automated ontology management (SEAM) system JO - J Biomed Semant VL - 6 UR - https://doi.org/10.1186/s13326-015-0011-7 DO - 10.1186/s13326-015-0011-7 ID - Doing-Harris2015 ER - TY - JOUR AU - Cahyani, D. E. AU - Wasito, I. PY - 2017 DA - 2017// TI - Automatic ontology construction using text corpora and ontology design patterns (ODPs) in Alzheimer’s disease JO - Jurnal Ilmu Komputer dan Informasi VL - 10 UR - https://doi.org/10.21609/jiki.v10i2.374 DO - 10.21609/jiki.v10i2.374 ID - Cahyani2017 ER - TY - CHAP AU - Qawasmeh, O. AU - Lefrançois, M. AU - Zimmermann, A. AU - Maret, P. PY - 2018 DA - 2018// TI - Improved categorization of computer-assisted ontology construction systems: focus on bootstrapping capabilities BT - Extended semantic web conference (ESWC2018) ID - Qawasmeh2018 ER - TY - STD TI - Zhang Y, Tudorache T, Horridge M, Musen MA. Helping users bootstrap ontologies: an empirical investigation. In: Proceedings of the 33rd. ID - ref28 ER - TY - JOUR AU - Heitmann, B. AU - Cyganiak, R. AU - Hayes, C. AU - Decker, S. PY - 2012 DA - 2012// TI - An empirically grounded conceptual architecture for applications on the web of data JO - IEEE Trans Syst Man Cybern Part C Appl Rev VL - 42 UR - https://doi.org/10.1109/TSMCC.2011.2145370 DO - 10.1109/TSMCC.2011.2145370 ID - Heitmann2012 ER - TY - JOUR AU - Simperl, E. AU - Buerger, T. AU - Hangl, S. AU - Woelger, S. AU - Popov, I. PY - 2012 DA - 2012// TI - Ontocom: a reliable cost estimation method for ontology development projects JO - Web Semant Sci Serv Agents World Wide Web VL - 16 UR - https://doi.org/10.1016/j.websem.2012.07.001 DO - 10.1016/j.websem.2012.07.001 ID - Simperl2012 ER - TY - STD TI - Maedche A, Staab S. Handbook on Ontologies, chapter Ontology learning. International Handbooks on Information Systems. Springer; 2004. ID - ref31 ER - TY - BOOK AU - Lindberg, D. A. AU - Humphreys, B. L. AU - McCray, A. T. PY - 1993 DA - 1993// TI - The unified medical language system ID - Lindberg1993 ER - TY - STD TI - “The Linking Open Data Cloud Diagram,” accessed 29 July 2017, http://lod-cloud.net/. UR - http://lod-cloud.net/ ID - ref33 ER - TY - BOOK AU - Bauer, F. AU - Kaltenböck, M. PY - 2011 DA - 2011// TI - Linked open data: the essentials PB - Edition mono/monochrom CY - Vienna ID - Bauer2011 ER - TY - STD TI - “Linked Life Data - A Semantic Data Integration Platform for the Biomedical Domain,” accessed 29 July 2017, http://linkedlifedata.com/. UR - http://linkedlifedata.com/ ID - ref35 ER - TY - JOUR AU - Noy, N. F. AU - Shah, N. H. AU - Whetzel, P. L. AU - Dai, B. AU - Dorf, M. AU - Griffith, N. AU - Jonquet, C. PY - 2009 DA - 2009// TI - BioPortal: ontologies and integrated data resources at the click of a mouse JO - Nucleic Acids Res VL - 37 UR - https://doi.org/10.1093/nar/gkp440 DO - 10.1093/nar/gkp440 ID - Noy2009 ER - TY - CHAP AU - Bundy, A. AU - Wallen, L. PY - 1984 DA - 1984// TI - Breadth-first search BT - Catalogue of artificial intelligence tools PB - Springer CY - Berlin Heidelberg UR - https://doi.org/10.1007/978-3-642-96868-6 DO - 10.1007/978-3-642-96868-6 ID - Bundy1984 ER - TY - STD TI - “MEDLINE®/PubMed® Resources Guide,” List of Links, accessed 24 Mar 2018, https://www.nlm.nih.gov/bsd/pmresources.html. UR - https://www.nlm.nih.gov/bsd/pmresources.html ID - ref38 ER - TY - CHAP AU - Manning, C. AU - Surdeanu, M. AU - Bauer, J. AU - Finkel, J. AU - Bethard, S. AU - McClosky, D. PY - 2014 DA - 2014// TI - The Stanford CoreNLP natural language processing toolkit BT - Proceedings of 52nd annual meeting of the association for computational linguistics: system demonstrations UR - https://doi.org/10.3115/v1/P14-5010 DO - 10.3115/v1/P14-5010 ID - Manning2014 ER - TY - BOOK AU - Lovins, J. B. PY - 1968 DA - 1968// TI - Development of a stemming algorithm ID - Lovins1968 ER - TY - STD TI - Aronson AR. Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program. In: Proceedings of the AMIA Symposium. American Medical Informatics Association; 2001. p. 17. ID - ref41 ER - TY - JOUR AU - Brown, P. F. AU - Desouza, P. V. AU - Mercer, R. L. AU - Pietra, V. J. D. AU - Lai, J. C. PY - 1992 DA - 1992// TI - Class-based n-gram models of natural language JO - Comput Linguist VL - 18 ID - Brown1992 ER - TY - CHAP AU - Nikolov, A. AU - Uren, V. S. AU - Motta, E. AU - De Roeck, A. N. PY - 2009 DA - 2009// TI - Overcoming Schema Heterogeneity between Linked Semantic Repositories to Improve Coreference Resolution BT - ASWC ID - Nikolov2009 ER - TY - CHAP AU - Banerjee, S. AU - Pedersen, T. PY - 2002 DA - 2002// TI - An adapted Lesk algorithm for word sense disambiguation using WordNet BT - International Conference on Intelligent Text Processing and Computational Linguistics PB - Springer CY - Berlin Heidelberg UR - https://doi.org/10.1007/3-540-45715-1_11 DO - 10.1007/3-540-45715-1_11 ID - Banerjee2002 ER - TY - STD TI - McCray AT. The UMLS Semantic Network. In: Proceedings Symposium on Computer Applications in Medical Care. American Medical Informatics Association. 1989. p. 503–7. ID - ref45 ER - TY - STD TI - McCray AT, Hole WT. Concepts, Issues, and Standards. Current Status of the NLM’s Umls Project: The Scope and Structure of the First Version of the UMLS Seoantic Network. In: Proceedings of the Annual Symposium on Computer Application in Medical Care. American Medical Informatics Association. 1990. p. 126. ID - ref46 ER - TY - STD TI - “Semantic Types and Groups,” accessed 29 July 2017, https://metamap.nlm.nih.gov/SemanticTypesAndGroups.shtml. UR - https://metamap.nlm.nih.gov/SemanticTypesAndGroups.shtml ID - ref47 ER - TY - CHAP AU - Kirschnick, J. AU - Akbik, A. AU - Hemsen, H. PY - 2014 DA - 2014// TI - Freepal: A Large Collection of Deep Lexico-Syntactic Patterns for Relation Extraction BT - LREC ID - Kirschnick2014 ER - TY - STD TI - “Home - Health-Lifesci.Schema.Org,” accessed 29 July 2017, http://health-lifesci.schema.org/. UR - http://health-lifesci.schema.org/ ID - ref49 ER - TY - BOOK AU - Brank, J. AU - Grobelnik, M. AU - Mladenić, D. PY - 2005 DA - 2005// TI - A survey of ontology evaluation techniques ID - Brank2005 ER - TY - CHAP AU - Pittet, P. AU - Barthélémy, J. PY - 2015 DA - 2015// TI - Exploiting Users’ feedbacks: towards a task-based evaluation of application ontologies throughout their lifecycle BT - International Conference on Knowledge Engineering and Ontology Development ID - Pittet2015 ER - TY - CHAP AU - Porzel, R. AU - Malaka, R. PY - 2004 DA - 2004// TI - A task-based approach for ontology evaluation BT - ECAI Workshop on Ontology Learning and Population, Valencia, Spain ID - Porzel2004 ER - TY - STD TI - Li J, Sun Y, Johnson RJ, Sciaky D, Wei CH, Leaman R, Davis AP, Mattingly CJ,* Wiegers TC, Lu Z. Anotating chemicals, diseases and their interactions in * biomedical literature, Proceedings of the Fifth BioCreative Challenge * Evaluation Workshop, p173–p182, 2015. ID - ref53 ER - TY - JOUR AU - Kilicoglu, H. AU - Shin, D. AU - Fiszman, M. AU - Rosemblat, G. AU - Rindflesch, T. C. PY - 2012 DA - 2012// TI - SemMedDB: a PubMed-scale repository of biomedical semantic predications JO - Bioinformatics VL - 28 UR - https://doi.org/10.1093/bioinformatics/bts591 DO - 10.1093/bioinformatics/bts591 ID - Kilicoglu2012 ER - TY - STD TI - “Alzheimer’s Disease Ontology - Summary | NCBO BioPortal,” accessed 25 Mar 2018, https://bioportal.bioontology.org/ontologies/ADO. UR - https://bioportal.bioontology.org/ontologies/ADO ID - ref55 ER - TY - CHAP AU - McBride, B. PY - 2001 DA - 2001// TI - Jena: Implementing the rdf model and syntax specification BT - Proceedings of the Second International Conference on Semantic Web-Volume 40 ID - McBride2001 ER - TY - STD TI - “MeSH Browser,” accessed 30 July 2017, https://meshb.nlm.nih.gov/search. UR - https://meshb.nlm.nih.gov/search ID - ref57 ER - TY - JOUR AU - Schriml, L. M. AU - Arze, C. AU - Nadendla, S. AU - Chang, Y. W. W. AU - Mazaitis, M. AU - Felix, V. AU - Feng, G. AU - Kibbe, W. A. PY - 2011 DA - 2011// TI - Disease ontology: a backbone for disease semantic integration JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gkr972 DO - 10.1093/nar/gkr972 ID - Schriml2011 ER - TY - JOUR AU - Degtyarenko, K. AU - De Matos, P. AU - Ennis, M. AU - Hastings, J. AU - Zbinden, M. AU - McNaught, A. AU - Alcántara, R. AU - Darsow, M. AU - Guedj, M. AU - Ashburner, M. PY - 2007 DA - 2007// TI - ChEBI: a database and ontology for chemical entities of biological interest JO - Nucleic Acids Res VL - 36 UR - https://doi.org/10.1093/nar/gkm791 DO - 10.1093/nar/gkm791 ID - Degtyarenko2007 ER - TY - STD TI - Classifying Semantic Relations in Bioscience Text, Barbara Rosario and Marti A. Hearst. In: The proceedings of the 42nd annual meeting of the Association for Computational Linguistics (ACL 2004), Barcelona. p. 2004. ID - ref60 ER - TY - JOUR AU - Rindflesch, T. C. AU - Fiszman, M. PY - 2003 DA - 2003// TI - The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text JO - J Biomed Inform VL - 36 UR - https://doi.org/10.1016/j.jbi.2003.11.003 DO - 10.1016/j.jbi.2003.11.003 ID - Rindflesch2003 ER - TY - STD TI - Brill E. A simple rule-based part of speech tagger. In: Proceedings of the third conference on Applied natural language processing. Association for Computational Linguistics. 1992. p. 152–5. ID - ref62 ER -