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Table 4 o-spanin families

From: Phage spanins: diversity, topological dynamics and gene convergence

Family representative (No. of members)

Members

Embedded

 HK97 (32)

HK97, 2851, CUS-3, HK106, HK140, HK446, HK542, HK544, HK633, HK75, Hk022, P13374, P22, POCJ13, PS34, Phi20, Phi75, ST160, ST64T, Sf101, Stx2, c341, epsilon34, mEP234, mEPX1, mEp043_c-1, mEp213, mEp235, mEpX2, phi80, sf6, vB_SemP_Emek

 Lambda (28)

Lambda, PhiES15, phiSG1, phiEt88, pSG3, SfI, ES18, Fels-1, Gifsy-2, ST64b, 1720a-02, 933 W, BP-4795, H-19B, Min27, Stx1, Stx2–86, Stx2-II, Stx2-I, Stx2_converting_phage_vB_EcoP_24B, TL-2011c, VT2-Sakai, YYZ-2008, cdtI, 21, DE3, HK629, HK630

 Bcep176 (15)

Bcep176, RSK1, SPC32H, SPC32N, SPN1S, SPN9TCW, TL-2011b, epsilon15, phiV10, BcepC6B, KS9, eiAU-183, PPpW-3, E1, phiPSA1

 HK620 (14)

HK620, PEp14, FSL_SP-058, FSL_SP-076, Pollock, Gifsy-1, FSL_SP-016, SE1, SPN3UB, ST104, mEp460, spn9CC, vB_SOSS_Oslo, ENT39118

 K11 (14)

K11, K30, KP32, MmP1b, vB_EamP-L1b, IME15b, phiSG-JL2b, phiYeO3–12b, vB_YenP_AP5b, EcoDS1b, K1Fb, PE3–1b, CR44bb, CR8b)

 N4 (12)

N4, vB_EamP-S6, Bp4, EC1-UPM, JWAlpha, JWDelta, ECBP1, RG-2014, pSb-1, vB_EcoP_G7C, vB_EcoP_PhAPEC5, vB_EcoP_PhAPEC7

 T7 (11)

T7, 13a, R, T3, T7M, Vi06, Y, YpP-R, YpP-Y, YpsP-G, phiA1122

 Kvp1 (8)

285P, BA14, Berlin, FE44, Kvp1, Yep-phi, Yepe2, YpP-G

 Groups of 4

(B3, JBD18, JBD67, JBD25), (KS5, Smp131, RSY1, phiRSA1), (phi15, PPpW-4, Phi-S1, phiIBB-PF7A)

 Groups of 3

(LIT1, Luz7, vB_PaeP_C2–10_Ab09), (phiE125, phi1026b, phi644–2), (M6, MP1412, YuA), (HK225, ZF40, mEp237), (BcepIL02, BcepMigl, ES2b)

 Groups of 2

(BcepMu, phiE255), (Bcep22, DC1), (F10, vB_PaeP_Tr60_Ab31), (phiPSA2, gh-1)

 Singletons

vB_EcoM_ECO1230–10, N15, Ecp1, ECML-117, PY54, BcepB1A, F116, S1, phiW-14, Cr30, Xfas53, Eta, phiPLPE

Overlapped

 Jerseya (27)

Jersey, FSL_SP-101, K1G, K1H, K1ind1, K1ind2, K1ind3, L13, SE2, SETP13, SETP3, SETP7, SS3e, vB_SenS-Ent1, vB_SenS-Ent2, vB_SenS-Ent3, vB_SenS_AG11, wksl3, FSL_SP-031_SOS, FSL_SP-038_SOS, FSL_SP-049_SOS, EK99P-1, EP23, HK578, JL1, SO-1, SSL-2009a

 DMS3 (16)

DMS3, D3112, F_HA0480sp-Pa1651, JBD24, JBD26, JBD30, JBD5, JBD88A, JD024, LPB1, MP22, MP29, MP38, MP42, MP48, PA1-KOR-2010

 P2 (15)

P2, ENT90, ST79, Fels-2, L-413C, PsP3, RE-2010, Wphi, fiAA91-ss, KL3, KS14, phi52237, phiE12–2, phiE202, phiCTX

 JH2 (11)

JH2, EC6, FO1a, FSL_SP-010, FSL_SP-012, FSL_SP-107, Felix01, Moogle, Mushroom, UAB_phi87, WV8

 T5a (10)

T5, My1, DT57C, EPS7, SPC35, Stitch, bV_EcoS_AKFV33, vB_EcoS_FFH1, Shivani_SOS, phiR201_SOS

 BcepNazgula (10)

BcepNazgul, 73, vB_Pae-Kakheti25, vB_PaeS_SCH_Ab26, KL1, HK639, mEP390, PY100, AF, AH2_SOS

 phiKMV (9)

phiKMV, LKD16, Luz19, MPK6, MPK7, PT2, PT5, phikF77, vB_Pae-TbilisiM32

 Chi (8)

Chi, SSU5, Enc34, FSL_SP-030, FSL_SP-088, FSL_SP-124, iEPS5, Redjac

 F1 (8)

F1, Bk, Fz, Pr, R/C, S708, Tb, Wb

 Mu (7)

Mu, D108, ENT47670, SfIV, SfV, APSE-1, APSE-2

 CP1 (7)

CP1, phiL7, OP1, Xop411, Xp10, Prado, Paz

 phiCbk (6)

phiCbk, CCrKarma, CcrMagneto, CcrSwift, CCrColossus, CcrRogue

 PR3 (5)

PR3(tecti), PR4(tecti), PR5(tecti), PR772(tecti), PRD1(tecti)

 Groups of 4

(Bcep1, Bcep43, Bcep781, BcepNY3), (CP8, CP30A, CPX, NCTC12673), (PAK_P1, JG004, PAK_P5, vB_PaeM_C2–10_Ab1), (9NA, ESSI-2, FSL_SP-062, FSL_SP-069), (NJ01, ECBP2, KBNP1711, PhiEco32), (MSW-3, PEi2, vB_AsaM-56, JD001_SOS)a

 Groups of 3

(K139, Kappa, VPUSM_8), (phiEa104, PhiEa21–4, vB_EamM-M7), (Era103, phiEA100, phiEa1H), (phiHSIC, Jenny_12G5, pYD38-B)

 Groups of 2

(KPP23, RDJL_Phi_1), (phi1402, phi1422), (phi92, phAPEC8), (phiAS7, phiR8–01), (phiMHaA1, vB_MhM_1152AP), (HP1, HP2), (P1, P7), (Aaphi23, S1249), (pIS4-A, pYD38-A), (PAP2, 119X), (PM1, phiEcoM-GJ1), (RSB1, Cd1b) (Bf7, phi2, LKA1b), (SuMu, vB_EamM-Y2b), (DFL12phi1, EE36P1_SOS)a, (Salvo, Sano_SOS)a

 Singletons

Ea35–70, OBP, EL, Xp15, phiKZ, 201phi2–1, phiJL001, 9 g, vB_XveM_DIBBI, KS10, PBC5, Kpp25, OP2, phi80–18, vB_RleM_PPF1, BcepGomr, vB_CsaP_GAP52, 7–11, vB_CskP_GAP227, PhiO18P, Presley, RSB3, vB_VpaS_MAR10, RSJ2, vB_RleS_L338C, vB_RglS_P106B, PhiPsa374, phi1M2–2

Separated

 T4 (47)

T4, phiAS5, Ac42, Moon, CC2, CC31, PG7, 65, AR1, ECML-134, JSE, PS2, PST, Phi1, RB14, RB32, RB49, RB51, Shfl2, T4T, e11–2, ime09, pSs-1, phiD1, vB_EcoM_ACG-C40, wV7, PX29, phiR1-RT, vB_EcoM-VR7, vB_EcoM_VR25, vB_YenM_TG1, 133, Aeh1, Bp7, JS10, JS98, RB69, S16, SP18, STML-198, Shf125875, hx01, ime08, vB_EcoM-VR20, vB_EcoM_JS09, vB_EcoM_PhAPEC2, vB_EcoM_VR26

 KP27 (7)

KP27, Lw1, Miller, RB16, RB43, KP15, vB_CsaM_GAP161

 rv5 (7)

rv5, 2_JES-2013, Av-05, vB_EcoM-FV3, 4MG, PVP-SE1, vB_CsaM_GAP31

 VP4 (7)

VP4, ICP3_2007_A, ICP3_2008_A, ICP3_2009_B, ICP3, N4_(Vibrio), VP3

 phiAS4 (6)

phiAS4, 25, 31, 44RR2.8 t, Aes012, Aes508

 Groups of 4

(KVP40, nt-1, VH7D, phi-pp2), (D3, PAJU2, phi297, vB_PaeS_PMG1), (K1–5, K1E, SP6, UAB_phi78_OOS)a

 Groups of 3

(CR3, CR9, phiTE), (PBECO_4, 121Q, vB_CsaM_GAP32), (CP21, CP220, CPt10)

 pVp-1 (2)

pVp-1, phi_3

 Singletons

CR5, B40–8, phiR1–37, Marshall, vB_RleM_P10VF, Acj9, 1 M3–16, phage_7–7-1, PhiKO2, BcepF1, Pf-WMP3, PhiP27, F108

  1. Representative phages of each family are highlighted in bold
  2. aindicates family with members from different architectures
  3. bindicates members that were manually added to the group after BLAST analysis for short sequences