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Table 2 Accuracy of the 3 methods and correlation

From: wTO: an R package for computing weighted topological overlap and a consensus network with integrated visualization tool

 

ReactomeDB (Total)

Pearson correlation

ARACNe

WGCNA

wTO (delta 0.1)

wTO (delta 0.2)

True negative

7234

2259

2633

7092

6520

5235

False negative

0

216

245

321

318

288

False positive

0

4975

4601

142

714

1999

True positive

328

112

83

7

10

40

Total

7562

7562

7562

7562

7562

7562