Skip to main content

Table 2 The production ability of each method for the eight target metabolites that were not producible by GridProd in the minimum case from FVA. FP, IK, and GP represent FastPros, IdealKnock and GridProd, respectively

From: Grid-based computational methods for the design of constraint-based parsimonious chemical reaction networks to simulate metabolite production: GridProd

Metabolites

FP min

FP max

IK min

IK max

GP min

GP max

DM_OXAM

Fail

Fail

Success

Success

Fail

Fail

EX_anhgm(e)

Fail

Fail

Success

Success

Fail

Fail

EX_colipa(e)

Success

Sucess

Success

Success

Fail

Fail

EX_etha(e)

Fail

Fail

Fail

Fail

Fail

Fail

EX_glcn(e)

Fail

Fail

Success

Success

Fail

Fail

EX_glyc3p(e)

Success

Sucess

Success

Success

Fail

Fail

EX_phe_L(e)

Success

Sucess

Success

Success

Fail

Fail

EX_urea(e)

Success

Sucess

Success

Success

Fail

Success

  1. “min” and “max” represent the minimum and the maximum cases from FVA, respectively