Skip to main content

Table 7 PR/(the number of knockouts) of each method for the 17 common producible target metabolites is shown as the knockout efficiency

From: Grid-based computational methods for the design of constraint-based parsimonious chemical reaction networks to simulate metabolite production: GridProd

Target

FastPros

IdealKnock

GridProd

12ppd__R_c

2.4480

0.2718

0.0049

5dglcn_c

0.5648

0.2666

0.0038

ala__D_c

0.0055

0.0011

0.0013

cgly_c

0.1381

0.0059

0.0003

cytd_c

0.0515

0.0967

0.0011

glyc_c

1.9623

0.5536

0.0037

gthrd_c

0.0108

0.0050

0.0002

gua_c

0.1148

0.0019

0.0001

his__L_c

0.0260

0.0523

0.0002

indole_c

0.3023

0.1698

0.0011

kdo2lipid4_c

0.1673

0.1183

0.0001

lac__D_c

3.3006

0.6336

0.0093

pyr_c

3.4759

1.1838

0.0087

succ_c

3.8455

0.6540

0.0071

thymd_c

0.0808

0.0059

0.0005

tyr__L_c

0.0761

0.1143

0.0012

uri_c

0.0309

0.0744

0.0017