Study | Rep | True positives | Actual FDR | AUC | ||||||
---|---|---|---|---|---|---|---|---|---|---|
 |  | (Total positives) | (SD) | (SD) | ||||||
 |  | Limma | edgeR | Proposed | Limma | edgeR | Proposed | Limma | edgeR | Proposed |
1 | 4 | 1.34 | 10.32 | 194.92 | 0.0000 | 0.0518 | 0.0484 | 0.6141 | 0.6038 | 0.8332 |
 |  | (1.34) | (10.92) | (207.26) | (0.0000) | (0.0619) | (0.0287) | (0.0117) | (0.0102) | (0.0093) |
 | 5 | 1.04 | 6.32 | 294.38 | 0.0100 | 0.0291 | 0.0409 | 0.6105 | 0.5946 | 0.8541 |
 |  | (1.06) | (6.60) | (307.54) | (0.0707) | (0.0591) | (0.0155) | (0.0122) | (0.0117) | (0.0083) |
 | 6 | 0.96 | 4.62 | 361.04 | 0.0000 | 0.0445 | 0.0420 | 0.6053 | 0.5839 | 0.8676 |
 |  | (0.96) | (4.80) | (377.26) | (0.0000) | (0.1230) | (0.0138) | (0.0107) | (0.0097) | (0.0075) |
2 | 4 | 0.60 | 2.82 | 26.44 | 0.0000 | 0.0632 | 0.0192 | 0.5771 | 0.5925 | 0.7554 |
 |  | (0.60) | (3.08) | (27.46) | (0.0000) | (0.1295) | (0.0310) | (0.0122) | (0.0094) | (0.0112) |
 | 5 | 0.50 | 1.76 | 86.90 | 0.0200 | 0.0857 | 0.0313 | 0.5675 | 0.5804 | 0.7698 |
 |  | (0.52) | (2.04) | (89.88) | (0.1414) | (0.2062) | (0.0220) | (0.0109) | (0.0100) | (0.0076) |
 | 6 | 0.16 | 1.08 | 136.00 | 0.0000 | 0.0367 | 0.0265 | 0.5617 | 0.5721 | 0.7792 |
 |  | (0.16) | (1.14) | (139.78) | (0.0000) | (0.1625) | (0.0155) | (0.0105) | (0.0105) | (0.0093) |
3 | 4 | 1.10 | 8.94 | 129.22 | 0.0067 | 0.0421 | 0.0373 | 0.6277 | 0.6474 | 0.8359 |
 |  | (1.12) | (9.32) | (137.30) | (0.0471) | (0.0743) | (0.0322) | (0.0107) | (0.0122) | (0.0072) |
 | 5 | 0.68 | 9.02 | 239.14 | 0.0000 | 0.0346 | 0.0393 | 0.6176 | 0.6413 | 0.8551 |
 |  | (0.68) | (9.32) | (249.58) | (0.0000) | (0.0817) | (0.0161) | (0.0110) | (0.0122) | (0.0098) |
 | 6 | 0.66 | 6.94 | 331.44 | 0.0000 | 0.0381 | 0.0408 | 0.6158 | 0.6446 | 0.8731 |
 |  | (0.66) | (7.14) | (345.90) | (0.0000) | (0.1041) | (0.0136) | (0.0096) | (0.0095) | (0.0061) |
4 | 4 | 0.72 | 7.68 | 121.68 | 0.0000 | 0.0554 | 0.0378 | 0.6083 | 0.6101 | 0.8069 |
 |  | (0.72) | (8.12) | (128.50) | (0.0000) | (0.0913) | (0.0293) | (0.0106) | (0.0122) | (0.0105) |
 | 5 | 0.94 | 5.86 | 211.54 | 0.0000 | 0.0326 | 0.0346 | 0.6035 | 0.6036 | 0.8257 |
 |  | (0.94) | (6.12) | (219.70) | (0.0000) | (0.0711) | (0.0166) | (0.0094) | (0.0107) | (0.0080) |
 | 6 | 0.66 | 4.06 | 296.70 | 0.0200 | 0.0290 | 0.0356 | 0.5966 | 0.5976 | 0.8410 |
 |  | (0.68) | (4.20) | (307.96) | (0.1414) | (0.1022) | (0.0132) | (0.0104) | (0.0101) | (0.0074) |