Identifying protein complexes based on node embeddings obtained from protein-protein interaction networks

BMC Bioinformatics

Table 3 Experimental results obtained by using RF to filter the candidate complexes which are predicted from the modified HPRD network by filtering edges with different simi-thres

Simi-thres	No. of edges left	No. of complexes	Precision	Recall	F-score	Δ
0.80	36164	999	0.6617	0.4181	0.5124	+0.0912
0.81	36009	999	0.6547	0.4306	0.5195	+0.0983
0.82	35869	1019	0.6487	0.4280	0.5157	+0.0945
0.83	35710	1006	0.6531	0.4293	0.5181	+0.0969
0.84	35523	999	0.6607	0.4326	0.5229	+0.1017
0.85	35311	992	0.6552	0.4359	0.5235	+0.1023
0.86	35117	992	0.6673	0.4326	0.5249	+0.1037
0.87	34887	979	0.6599	0.4313	0.5216	+0.1004
0.88	34621	975	0.6728	0.4221	0.5187	+0.0975
0.89	34278	950	0.6505	0.4207	0.5110	+0.0898
0.90	33921	943	0.6585	0.4221	0.5144	+0.0932

Δ denotes the improvement of F-score compare with using SLPC alone. Bold values denote the best scores corresponding to the specific metric

ISSN: 1471-2105