Identifying protein complexes based on node embeddings obtained from protein-protein interaction networks

BMC Bioinformatics

Table 6 Experimental results obtained by using RF to filter the candidate complexes which are predicted from the modified DIP network by adding edges with different simi-thres

Simi-thres	No. of added edges	No. of complexes	Precision	Recall	F-score	Δ
0.35	3351	702	0.8305	0.4428	0.5776	+0.0254
0.36	3153	707	0.8317	0.4458	0.5804	+0.0282
0.37	2979	698	0.8295	0.4398	0.5748	+0.0226
0.38	2784	696	0.8290	0.4473	0.5810	+0.0288
0.39	2586	691	0.8234	0.4413	0.5746	+0.0224
0.40	2378	677	0.8198	0.4339	0.5674	+0.0152
0.41	2196	685	0.8161	0.4354	0.5678	+0.0156
0.42	2019	698	0.8095	0.4383	0.5687	+0.0165
0.43	1831	689	0.8084	0.4339	0.5647	+0.0125
0.44	1634	703	0.8108	0.4413	0.5715	+0.0193
0.45	1473	710	0.8056	0.4413	0.5702	+0.0180

Δ denotes the improvement of F-score compare with using SLPC alone. Bold values denote the best scores corresponding to the specific metric

ISSN: 1471-2105