Skip to main content

Table 7 Comparison results for link prediction on HPRD and DIP

From: Identifying protein complexes based on node embeddings obtained from protein-protein interaction networks

Method

Mean ranking

Hits@1

Hits@10

Hits@50

HPRD

 random

52.87

2

7.8

47.8

 node2vec

24.79

29.8

53.4

78.4

 PE

35.53

25.64

52.14

70.09

 AdjustCD

35.07

23.93

60.68

68.38

DIP

 random

49.01

2.8

10.8

51.4

 node2vec

10.50

59

80.4

91.4

 PE

30.73

3.8

29.8

75.4

 AdjustCD

29.03

8.8

37.8

77.4

  1. Bold values denote the best scores corresponding to the specific metric. The value of each column in terms of Hit@N with different N is the percentage of true edges ranked in top N
Back to article page