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Fig. 1 | BMC Bioinformatics

Fig. 1

From: GPrank: an R package for detecting dynamic elements from genome-wide time series

Fig. 1

GPrank analysis workflow. Application of HTS at n time points produces millions of short reads. These short reads are then aligned to a reference sequence (e.g., genome or transcriptome) and then the abundances of the genetic elements are estimated. GPrank requires two matrices as input data: a matrix Y which contains the mean abundances of m genetic elements estimated at n time points and a matrix V which contains the corresponding variances for the estimated abundances

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