From: Computational discovery of direct associations between GO terms and protein domains
Optimal Weights | F-measure | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Dataset | AUC | SIFTS | SP | TR | SIFTS-IEA | SP-IEA | TR-IEA | Training | Test | Threshold | |
GO-Pfam | 0.9605 | 1 | 1 | 6 | 10 | 10 | 10 | 0.926 | 0.924 | 0.005 | |
MF | GO-CATH | 0.9710 | 1 | 1 | 10 | 10 | 1 | 9 | 0.935 | 0.943 | 0.004 |
GO-SCOP | 0.9693 | 1 | 1 | 10 | 10 | 1 | 2 | 0.954 | 0.931 | 0.004 | |
GO-Pfam | 0.9546 | 1 | 1 | 1 | 10 | 1 | 8 | 0.898 | 0.903 | 0.008 | |
BP | GO-CATH | 0.9726 | 1 | 1 | 1 | 10 | 1 | 5 | 0.922 | 0.938 | 0.007 |
GO-SCOP | 0.9756 | 1 | 1 | 1 | 10 | 1 | 3 | 0.943 | 0.939 | 0.007 | |
GO-Pfam | 0.9228 | 1 | 1 | 6 | 10 | 1 | 10 | 0.871 | 0.866 | 0.003 | |
CC | GO-CATH | 0.9741 | 1 | 1 | 1 | 10 | 1 | 9 | 0.955 | 0.932 | 0.003 |
GO-SCOP | 0.9684 | 1 | 1 | 1 | 10 | 1 | 6 | 0.927 | 0.906 | 0.005 |