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Table 1 Distance metrics that measure the average distance between the atoms of superimposed proteins

From: Automated shape-based clustering of 3D immunoglobulin protein structures in chronic lymphocytic leukemia

Similarity metric

Method or software

RMSD

MAMMOTH [55], LGA/GDT [56]

p-value

[57]

SAS score & GSAS score

[58]

TM-score

TM-align, Fr-TM-align [59]

S score

MatAlign [60]

STRUCTAL score

LOVOalign [61]

Q-score

SSM [62]

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BMC Bioinformatics

ISSN: 1471-2105

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