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Table 4 Genes with the largest fold change between hNSC and NHA cell lines (p-values)

From: Expression analysis of RNA sequencing data from human neural and glial cell lines depends on technical replication and normalization methods

aLog2Transformed

RPKM Normalized

aTMM Normalized

UQS Normalized

PARD6G-AS1 (4.7 × 10−3)

HNRNPU (2.8 × 10−10)

PARD6G-AS1 (4.7 × 10− 3)

ZNF496 (6.1 × 10−7)

HNRNPU (1.6 × 10−7)

ZNF496 (2.2 × 10−8)

HNRNPU (1.5 × 10−7)

PARD6G-AS1 (1.9 × 10−2)

RNF126 (4.8 × 10−4)

PARD6G-AS1 (5.0 × 10− 3)

RNF126 (4.9 × 10− 4)

HNRNPU (1.8 × 10− 10)

OR4F17 (2.8 × 10− 3)

RNF126 (2.0 × 10− 4)

OR4F17 (2.8 × 10− 3)

ACTB (1.1 × 10− 3)

LINC01002 (2.3 × 10− 3)

OR4F17 (2.6 × 10− 3)

LINC01002 (2.3 × 10− 3)

RNF126 (1.6 × 10− 3)

LOC105376854 (2.7 × 10− 4)

LOC105376854 (9.6 × 10− 5)

LOC105376854 (2.7 × 10− 4)

OR4F17 (1.2 × 10− 2)

HCN2 (5.8 × 10− 4)

MBD3 (6.1 × 10− 6)

HCN2 (5.9 × 10− 4)

LINC01002 (1.0 × 10− 2)

PRSS57 (5.3 × 10− 4)

ARHGAP45 (1.2 × 10− 5)

PRSS57 (5.5 × 10− 4)

ARHGAP45 (2.1 × 10− 4)

MBD3 (3.9 × 10− 5)

CIRBP-AS1 (8.0 × 10− 6)

MBD3 (4.1 × 10− 5)

ADAMTSL5 (6.5 × 10− 5)

ARID3A (2.4 × 10− 4)

ADAMTSL5 (8.3 × 10− 6)

CIRBP-AS1 (4.8 × 10− 5)

ARID3A (7.2 × 10− 4)

  1. Significanta differentially expressed genes were only uncovered following log2 transformation and TMM normalization (Benjamini-Hochberg FDR = 10%). Common genes shown in italics