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Table 1 Comprehensive information about Phytozome’s transcriptomes (version and number of protein coding sequences) and RNA-seq datasets (library ID and number of raw reads) downloaded to evaluate the best plant reference transcriptomes in Module 4

From: TransFlow: a modular framework for assembling and assessing accurate de novo transcriptomes in non-model organisms

Source Transcriptome version Protein-coding transcripts Library ID Raw reads
Arabidopsis thaliana seedligs TAIR 10 35 386 SRR4897845 78 742 616
Populus trichocarpa leaves 3.1 63 498 SRR1030352 65 442 430
Vitis vinifera leaves 12X 26 346 SRR1282039 21 171 177
Oryza sativa grain 7.0 52 424 SRR2072478 55 814 494
Triticum aestivum roots 2.2 293 053 DRR003148 7 703 831
Zea mays roots 5b+ 88 760 SRR1282039 17 003 984
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