Table 1 Comprehensive information about Phytozome’s transcriptomes (version and number of protein coding sequences) and RNA-seq datasets (library ID and number of raw reads) downloaded to evaluate the best plant reference transcriptomes in Module 4
Source | Transcriptome version | Protein-coding transcripts | Library ID | Raw reads |
|---|---|---|---|---|
Arabidopsis thaliana seedligs | TAIR 10 | 35 386 | SRR4897845 | 78 742 616 |
Populus trichocarpa leaves | 3.1 | 63 498 | SRR1030352 | 65 442 430 |
Vitis vinifera leaves | 12X | 26 346 | SRR1282039 | 21 171 177 |
Oryza sativa grain | 7.0 | 52 424 | SRR2072478 | 55 814 494 |
Triticum aestivum roots | 2.2 | 293 053 | DRR003148 | 7 703 831 |
Zea mays roots | 5b+ | 88 760 | SRR1282039 | 17 003 984 |