AllTransSize
|
FLN
|
The sum of every transcript length in nucleotides
|
↓
|
N50
|
FLN
|
The shortest contig(or scaffold) length (in nucleotides) in the set needed to cover 50% of AllTransSize
|
↑
|
N90
|
FLN
|
The shortest contig (or scaffold) length (in nucleotides) in the set needed to cover 90% of AllTransSize
|
↑
|
Contigs
|
FLN
|
Number of contigs mapping at least one pair of reads
|
↓
|
Contigs500
|
FLN
|
Same as previous, but taking into account only contigs > 500 nt
|
↑
|
MeanContigLen
|
FLN
|
Mean sequence length (in nucleotides) across all useful contigs or scaffolds
|
↑
|
Ns
|
FLN
|
Number of Ns (indeterminations) in the contigs or scaffolds
|
↓
|
MeanGapLen
|
FLN
|
Mean indetermination length in nucleotides, where 1 indicates that gaps are randomly distributed, and greater values indicate real gaps
|
↓
|
DiffProts
|
FLN
|
Number of unique, different proteins
|
↑
|
DiffComplProts
|
FLN
|
Same as previous, but onlyconsidering those proteins that seem to be complete
|
↑
|
MissAssembl
|
FLN
|
Percentage of contigs where the annotating protein finds similarity in both plus and minus strands
|
↓
|
MeanContigCov
|
FLN
|
Fraction of the contig lengths (expressed as percentage) covered by mapped reads. This fraction is calculated per contig an then averaged for the full assembly
|
↑
|
ComplOrtho
|
BUSCO
|
Percentage of OrthoDB orthologues from a lineage fully identified in one single contig
|
↑
|
FragOrtho
|
BUSCO
|
Percentage of OrthoDB orthologues from a lineage that are fragmented across several contigs
|
↑
|
DuplOrtho
|
BUSCO
|
Percentage of OrthoDB orthologues from a lineage that are repeated in several contigs
|
↓
|