Case study 1: Grapevine
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scOasesK35
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|
OASES-scaffolded assembly with k-mer 35
| | |
0.383
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scOasesK25
|
|
OASES-scaffolded assembly with k-mer 25
| | |
0.890
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scSoap_cat_cd_rcMin2
|
|
Concatenation of the two SOAP-scaffolded assemblies with different kmers, sequence redundancy removal and Minimus2 reconciliation
| | |
1.179
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scOases_cat
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|
Concatenation of the two SOAP-scaffolded assemblies with different kmers
| | |
1.249
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scRay_cat_cd_rcMin2
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Concatenation of the two RAY-scaffolded assemblies with different kmers, sequence redundancy removal and Minimus2 reconciliation
| | |
1.311
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Case study 2: Olive tree
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scOases_cat_cd
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Concatenation of the two OASES-scaffolded assemblies with different kmers and sequence redundancy removal
| | |
0.297
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aaMin2/scALL/454Cap3
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All scafolded assemblies
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CAP3-reconciled assembly
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Minimus2-combined assembly of assemblies
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0.323
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scOases_cat
|
|
Concatenation of the two SOAP-scaffolded assemblies with different kmers
| | |
0.324
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arMIRA/scOases_cat_cd
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Concatenation of the two OASES-scaffolded assemblies with different kmers and sequence redundancy removal
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Pre-processed reads
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Assembly-reads combination using MIRA4
|
0.352
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aaMin2/scOases_cat_cd_rcMin2/454Cap3
|
|
Concatenation of the two OASES-scaffolded assemblies with different kmers, sequence redundancy removal and Minimus2 reconciliation
|
CAP3-reconciled assembly
|
Minimus2-combined assembly of assemblies
|
0.367
|
Case study 3: Chestnut
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arMIRA/scOases_cat_cd_rcMin2
|
|
Concatenation of the two OASES-scaffolded assemblies with different kmers, sequence redundancy removal and Minimus2 reconciliation
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Pre-processed reads
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Assembly-reads combination using MIRA4
|
0.189
|
arMIRA/scOases_cat_cd
|
|
Concatenation of the two OASES-scaffolded assemblies with different kmers and sequence redundancy removal
|
Pre-processed reads
|
Assembly-reads combination using MIRA4
|
0.205
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arMIRA/scOasesK25
|
|
OASES-scaffolded assembly with k-mer 25
|
Pre-processed reads
|
Assembly-reads combination using MIRA4
|
0.225
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aaMin2/scOases_cat_cd_rcMin2/454Cap3
|
|
Concatenation of the two OASES-scaffolded assemblies with different kmers, sequence redundancy removal and Minimus2 reconciliation
|
CAP3-reconciled assembly
|
Minimus2-combined assembly of assemblies
|
0.269
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aaMin2/scALL/454Cap3
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|
All scafolded assemblies
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CAP3-reconciled assembly
|
Minimus2-combined assembly of assemblies
|
0.270
|