Table 1 Summary of CUDAlign stages, including the SW phase it belongs to and the processor where it is executed
From: DNA sequences alignment in multi-GPUs: acceleration and energy payoff
Stage | Description | SW Phase | Who |
|---|---|---|---|
1 | Obtaining the optimal score. | 1 | GPU |
2 | Partial traceback. | 2 | GPU |
3 | Splitting partitions. | 2 | GPU |
4 | Balanced splitting. | 2 | CPU |
5 | Concatenating the optimal alignment. | 2 | CPU |
6 | Alignment visualization (optional). | 2 | CPU |