Skip to main content

Table 1 Summary of CUDAlign stages, including the SW phase it belongs to and the processor where it is executed

From: DNA sequences alignment in multi-GPUs: acceleration and energy payoff

Stage Description SW Phase Who
1 Obtaining the optimal score. 1 GPU
2 Partial traceback. 2 GPU
3 Splitting partitions. 2 GPU
4 Balanced splitting. 2 CPU
5 Concatenating the optimal alignment. 2 CPU
6 Alignment visualization (optional). 2 CPU