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Table 8 Pairwise comparison of PQ with ME, ML, MP, and QP

From: PQ, a new program for phylogeny reconstruction

Dataset

ME

ML

MP

QP

Metazoa-10

466/240

530/261

683/189

342/255

Metazoa-15

483/291

566/300

758/184

370/270

Fungi-15

467/275

638/209

730/181

352/302

Proteobacteria-15

283/188

403/143

417/127

236/184

Metazoa-25

432/266

458/270

676/113

413/220

Fungi-30

412/390

525/313

687/186

396/360

Proteobacteria-30

353/233

430/186

530/119

338/232

Fungi-45

303/406

412/315

589/152

382/306

Proteobacteria-45

350/273

426/217

550/128

347/279

  1. The number before “/” in each cell is the number of alignments for which PQ result is closer to the species tree, the second number is the number of alignments for which PQ result is more distant from the species tree. Statistically significant (p<0.001) results are in boldface