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Table 2 P-values or P(k) of each pathway under different methods

From: Probabilistic prioritization of candidate pathway association with pathway score

  p53 estrogen Jak-STAT mTOR oocyte meiosis taste transduction
Size 68 (290) 99 (838) 158 (1039) 60 (433) 124 (499) 83 (247)
Bayesian 0.717 0.736 0.895 0.722 0.611 0.554
Logistic (sum) 0.386 0.447 0.009 0.006 0.038 0.006
GSEA 0.264 0.134 0.306 0.571 <1e-4 0.228
SPIA 0.195 0.396 0.266 0.956 0.222 0.983
Global <1e-21 <1e-17 <1e-22 <1e-23 <1e-16 <1e-15
ORA 0.036 0.101 0.275 0.469 0.086 0.083
Fisher’s <1e-214 0 <1e-311 <1e-314 0 <1e-67
  1. Numbers underlined and in boldface indicate the most influential pathway (top-ranked) under each test; while numbers in boldface represent the least influential pathway. The second row lists the number of genes in each pathway, where the number in parentheses includes the genes in sub-pathway. The p-values under Global and Fisher’s are asymptotic approximates