Table 1 Description of tumor genotype states and corresponding genotype of total copy number: homozygous deletion (HOMD), hemizygous deletion LOH (DLOH), copy neutral LOH (NLOH), diploid heterozygous (HET), gain of 1 allele (GAIN), amplified LOH (ALOH), allele-specific copy number amplification (ASCNA), balanced copy number amplification (BCNA), and unbalanced copy number amplification (UBCNA)
State (j) | Genotype | Copy number (CT) | Allelic information |
|---|---|---|---|
1 | 0 | 0 | HOMD |
2 | A | 1 | DLOH |
3 | AA | 2 | NLOH |
4 | AB | 2 | HET |
5 | AAB | 3 | GAIN |
6 | AAA | 3 | ALOH |
7 | AAAB | 4 | ASCNA |
8 | AABB | 4 | BCNA |
9 | AAAA | 4 | ALOH |
10 | AAAAB | 5 | ASCNA |
11 | AAABB | 5 | UBCNA |
12 | AAAAA | 5 | ALOH |