PanDelos: a dictionary-based method for pan-genome content discovery

BMC Bioinformatics

Table 2 Number of genomes per gene family in 7 serotype Typhi of the Salmonella enterica species

Genome count	PanDelos	EDGAR	Roary
1	241	219	236
2	74	72	87
3	27	28	35
4	93	42	108
5	213	246	213
6	469	491	464
7	3748	3749	3751
Total	4865	4847	4894

The table reports the count of gene families found in a given amount (from 1 to 7) of genomes, for each of the tested algorithms. Families found in only 1 genome are the singletons, whereas families found in all 7 genomes are the core families. The whole dataset consists of 31,311 gene sequences (CDS) that were clustered in more then 4800 gene families by the three approaches

ISSN: 1471-2105