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Table 3 Number of genomes per gene family in 14 Xanthomonas campestris species

From: PanDelos: a dictionary-based method for pan-genome content discovery

Genome count

PanDelos

EDGAR

Roary

1

3050

2572

7143

2

743

854

1864

3

797

873

2112

4

585

600

3811

5

233

249

1086

6

159

201

86

7

110

111

40

8

128

143

104

9

400

431

797

10

196

222

12

11

107

98

13

12

203

181

54

13

715

630

642

14

1742

1829

50

Total

9168

8994

17814

  1. The table reports the count of gene families found in a given amount (from 1 to 14) of genomes, for each of the tested algorithms. The dataset consists of a total of 56,759 input gene sequences
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BMC Bioinformatics

ISSN: 1471-2105

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