BMC Bioinformatics

Table 1 Summary statistics of networks detected using different e-value thresholds

From: Multilevel comparative bioinformatics to investigate evolutionary relationships and specificities in gene annotations: an example for tomato and grapevine

	e⁻³	e^− 50
Total nodes	61,269	54,655
Total edges	3,699,964	1,354,314
Tomato nodes	32,333	27,547
Grapevine nodes	28,936	27,108
Orthology edges	17,823	17,823
Paralogy edges	3,682,141	1,336,491
Total networks	641	3601
Total 2-genes networks	385	2143
Total 3–9 genes networks	243	1356
Total 10+ genes networks	12	102
“Big network” nodes	59,306	43,236
“Big network” edges	3,695,231	1,328,306
“Big network” tomato nodes	31,312	21,456
“Big network” grapevine nodes	27,994	21,780

Statistics for the networks detected by using different e-value thresholds (e⁻⁵⁰, for defining paralogs, and e⁻³, to define even looser similarities, respectively)

Back to article page

ISSN: 1471-2105

Contact us

General enquiries: journalsubmissions@springernature.com