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Table 1 Parameters’ summary used by SWIM for Schulte et al. GBM dataset [25]

From: SWIM tool application to expression data of glioblastoma stem-like cell lines, corresponding primary tumors and conventional glioma cell lines

Parameter

Value

Number

FC-threshold

1.5

–

FDR-threshold

0.05

–

ρ-threshold

0.71

–

k-mean clusters

–

3

DEGs

–

787

Correlation network nodes

–

732

Correlation network edges

–

75209

Switch

–

171

  1. Parameters column refers to: Fold-Change (FC), False Discovery Rate (FDR), Pearson correlation (ρ) thresholds, clusters set for k-means algorithm (k-means clusters), Differentially Expressed Genes (DEGs), nodes and edges of correlation network, and switch genes (switch)
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BMC Bioinformatics

ISSN: 1471-2105

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