From: Assessing the impact of exact reads on reducing the error rate of read mapping
Data set | Target genome | Genome length | Indel+SNV % | # SNVs | # Insertions | # Deletions | Read length | Coverage | Simulator |
---|---|---|---|---|---|---|---|---|---|
ReadSet1 | E. coli-Mut1 | 4639675 | 0.1 | 4640 | 0 | 0 | 150 | 100× | DWGSIM |
ReadSet2 | E. coli-Mut2 | 4639675 | 0.1 | 4640 | 0 | 0 | 150 | 100× | DWGSIM |
ReadSet3 | E. coli-Mut3 | 4639138 | 0.1 | 4205 | 0 | 537 | 150 | 100× | DWGSIM |
ReadSet4 | E. coli-Mut4 | 4640180 | 0.1 | 4135 | 505 | 0 | 150 | 100× | DWGSIM |
ReadSet5 | E. coli-Mut1 | 4639675 | 0.1 | 4640 | 0 | 0 | 150 | 20× | DWGSIM |
ReadSet6 | E. coli-Mut2 | 4639675 | 0.1 | 4640 | 0 | 0 | 150 | 20× | DWGSIM |
ReadSet7 | E. coli-Mut3 | 4639138 | 0.1 | 4205 | 0 | 537 | 150 | 20× | DWGSIM |
ReadSet8 | E. coli-Mut4 | 4640180 | 0.1 | 4135 | 505 | 0 | 150 | 20× | DWGSIM |
ReadSet9 | E. coli-Mut1 | 4639675 | 0.1 | 4640 | 0 | 0 | 150 | 20× | ART |
ReadSe10 | E. coli-Mut2 | 4639675 | 0.1 | 4640 | 0 | 0 | 150 | 20× | ART |
ReadSet11 | E. coli-Mut3 | 4639138 | 0.1 | 4205 | 0 | 537 | 150 | 20× | ART |
ReadSet12 | E. coli-Mut4 | 4640180 | 0.1 | 4135 | 505 | 0 | 150 | 20× | ART |