Skip to main content

Table 2 Simulated data sets properties

From: Assessing the impact of exact reads on reducing the error rate of read mapping

Data set Target genome Genome length Indel+SNV % # SNVs # Insertions # Deletions Read length Coverage Simulator
ReadSet1 E. coli-Mut1 4639675 0.1 4640 0 0 150 100× DWGSIM
ReadSet2 E. coli-Mut2 4639675 0.1 4640 0 0 150 100× DWGSIM
ReadSet3 E. coli-Mut3 4639138 0.1 4205 0 537 150 100× DWGSIM
ReadSet4 E. coli-Mut4 4640180 0.1 4135 505 0 150 100× DWGSIM
ReadSet5 E. coli-Mut1 4639675 0.1 4640 0 0 150 20× DWGSIM
ReadSet6 E. coli-Mut2 4639675 0.1 4640 0 0 150 20× DWGSIM
ReadSet7 E. coli-Mut3 4639138 0.1 4205 0 537 150 20× DWGSIM
ReadSet8 E. coli-Mut4 4640180 0.1 4135 505 0 150 20× DWGSIM
ReadSet9 E. coli-Mut1 4639675 0.1 4640 0 0 150 20× ART
ReadSe10 E. coli-Mut2 4639675 0.1 4640 0 0 150 20× ART
ReadSet11 E. coli-Mut3 4639138 0.1 4205 0 537 150 20× ART
ReadSet12 E. coli-Mut4 4640180 0.1 4135 505 0 150 20× ART