Assessing the impact of exact reads on reducing the error rate of read mapping

BMC Bioinformatics

Table 2 Simulated data sets properties

Data set	Target genome	Genome length	Indel+SNV %	# SNVs	# Insertions	# Deletions	Read length	Coverage	Simulator
ReadSet1	E. coli-Mut1	4639675	0.1	4640	0	0	150	100×	DWGSIM
ReadSet2	E. coli-Mut2	4639675	0.1	4640	0	0	150	100×	DWGSIM
ReadSet3	E. coli-Mut3	4639138	0.1	4205	0	537	150	100×	DWGSIM
ReadSet4	E. coli-Mut4	4640180	0.1	4135	505	0	150	100×	DWGSIM
ReadSet5	E. coli-Mut1	4639675	0.1	4640	0	0	150	20×	DWGSIM
ReadSet6	E. coli-Mut2	4639675	0.1	4640	0	0	150	20×	DWGSIM
ReadSet7	E. coli-Mut3	4639138	0.1	4205	0	537	150	20×	DWGSIM
ReadSet8	E. coli-Mut4	4640180	0.1	4135	505	0	150	20×	DWGSIM
ReadSet9	E. coli-Mut1	4639675	0.1	4640	0	0	150	20×	ART
ReadSe10	E. coli-Mut2	4639675	0.1	4640	0	0	150	20×	ART
ReadSet11	E. coli-Mut3	4639138	0.1	4205	0	537	150	20×	ART
ReadSet12	E. coli-Mut4	4640180	0.1	4135	505	0	150	20×	ART

ISSN: 1471-2105