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Table 7 Real dataset analysis where a closely related genome is used as a reference

From: Assessing the impact of exact reads on reducing the error rate of read mapping

Assembly Exact EIM (v1) EIM (v2) Bowtie2 MaSuRCA EIM (v1) + MaSuRCA
Contigs-500 497 334 263 259 114 114
N50 (kbp) 12.3 22.2 32 29.3 106 106
Errors 58 618 1190 2472 2407 1786
IUPAC-codes 0 17 56 280 0 5
Genome-Fraction (%) 87.013 87.811 88.578 88.575 99.058 99.058
  1. The evaluation metrics has been defined in the text. The columns headed ’Exact’, ’EIM (v1)’, ’EIM (v2)’, ’Bowtie2’, ’MaSuRCA’ and ’EIM (v1) + MaSuRCA’ represent the contiguity and quality of contigs constructed by ExactMapping step of EIM, EIM (v1), EIM (v2), Bowtie2, MaSuRCA and combining the contig sets of EIM (v1) and MaSuRCA assembler, respectively