ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events

BMC Bioinformatics

Table 1 Number of alignments on the simulated datasets

Sample	Tool	Total reads	Unmapped	Number of alignments per read					Mapped reads
				1	2	3	4	5
5M	ASGAL	3,226,895	281,767	2,938,383	6734	2	9	0	2,945,128
	STAR		75,947	3,150,948	0	0	0	0	3,150,948
10M	ASGAL	6,522,455	571,202	5,942,220	9009	13	10	1	5,951,253
	STAR		166,593	6,355,862	0	0	0	0	6355862

For each considered Sample (5M and 10M), the number of reads simulated from the 656 considered genes is shown along with the number of Unmapped reads, the number of reads mapped only once, the number of reads mapped multiple times, and the total number of Mapped Reads by the considered Tool (ASGAL and STAR)

ISSN: 1471-2105