Table 6 For each considered knockdown datasets and for each considered event type, we reported the number of AS events identified by ASGAL with respect to the considered genes, i.e. the genes involved in the 81 considered RT-PCR validated AS events, and how many of these events were also identified by the other tools considered in our analysis
From: ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events
| Â | SRR1513332 | SRR1513333 | SRR1513334 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | ES | A3 | A5 | IR | ES | A3 | A5 | IR | ES | A3 | A5 | IR |
ASGAL | 343 | 168 | 141 | 56 | 356 | 170 | 138 | 50 | 323 | 149 | 140 | 51 |
SplAdder | 33 | 18 | 3 | 2 | 35 | 17 | 2 | 1 | 28 | 18 | 2 | 1 |
rMATS | 314 | 65 | 48 | 18 | 328 | 65 | 54 | 16 | 302 | 63 | 46 | 18 |
SUPPA2 | 193 | 83 | 78 | 17 | 191 | 82 | 78 | 16 | 189 | 83 | 76 | 17 |