Table 1 Track collection and aim of analysis
From: Mind the gaps: overlooking inaccessible regions confounds statistical testing in genome analysis
Tracks collection | Number of tracks | Genome | Source of Genomic tracks | Purpose |
|---|---|---|---|---|
Histone modifications | 477 | hg19 | ENCODE | Investigating the nature and extent of overlap of public genomic tracks with genome assembly gaps |
DNase I hypersensitive sites | 838 | Â | Â | Â |
Transcription factor binding sites (K562) | 568 | Â | Â | Â |
DNase I hypersensitive sites | 95 | hg38 | Â | Â |
Randomly selected tracks from the above collections | 100 | hg19 | ENCODE | Understand the impact of not avoiding assembly gaps on the conclusions of statistical colocalization analysis |
All tracks selected from the above collection | 95 | hg38 | Â | Â |